Produce research protocol and example log with inputs, checks, findings and limitations.
2026-10-26.2 · 60 minutes estimated; work in several sessions
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Prerequisites and goal
Choose a target role and explain research question and evidence. Diagnose first, then revisit the checklist as needed.
Start with diagnostics; skip explanations you can already apply independently.
Research question and evidence
Use research question and evidence to make decisions inspectable.
Turn a topic of interest into an observable or testable question.
Teaching example: A research question needs a population, variables and scope.. Predict the result, independently check the key step, and compare these assumptions with the actual role. Do not use demonstration results as real-world advice.
Protocol and variables
Use protocol and variables to make decisions inspectable.
Specify inputs, outcomes, controls and repetition.
Teaching example: Changing two conditions at once obscures attribution.. Predict the result, independently check the key step, and compare these assumptions with the actual role. Do not use demonstration results as real-world advice.
Safety and local procedures
Use safety and local procedures to make decisions inspectable.
Identify required training and local SOPs and list questions.
Teaching example: Public guidance does not replace local training and supervision.. Predict the result, independently check the key step, and compare these assumptions with the actual role. Do not use demonstration results as real-world advice.
Records and sample tracking
Use records and sample tracking to make decisions inspectable.
Record sample IDs, dates, method versions and raw results.
Teaching example: Retain anomalies and failures, not only successful results.. Predict the result, independently check the key step, and compare these assumptions with the actual role. Do not use demonstration results as real-world advice.
Analysis and uncertainty
Use analysis and uncertainty to make decisions inspectable.
Describe repeat measurements and document exclusion rules.
Teaching example: Define exclusions before viewing outcomes where possible.. Predict the result, independently check the key step, and compare these assumptions with the actual role. Do not use demonstration results as real-world advice.
Reproducibility and versioning
Use reproducibility and versioning to make decisions inspectable.
Create a data dictionary, script versions and run instructions.
Teaching example: Overwriting same-named files can break input/result traceability.. Predict the result, independently check the key step, and compare these assumptions with the actual role. Do not use demonstration results as real-world advice.
Research presentation and limitations
Use research presentation and limitations to make decisions inspectable.
Write the question, method, result, limitations and next experiment.
Teaching example: No observed difference does not prove equivalence.. Predict the result, independently check the key step, and compare these assumptions with the actual role. Do not use demonstration results as real-world advice.
Worked example · fictional
From a problem to inspectable work
Synthetic linear calibration: blank 0.2, slope 0.5 response/concentration; replicate responses 2.1 and 2.3. QC recovery is 90%, predefined acceptance 95–105%.
Mean response 2.2; (2.2−0.2)/0.5=4. QC fails, so this is not an accepted result.
Further judgment: The value looks plausible but QC fails. What next?
Investigate under the protocol, flag affected results and document retesting
Deliver research protocol and example log: the calculation reference is 4; the recommendation must respect Investigate under the protocol, flag affected results and document retesting. Separate numbers, inference and unknowns.
Failure case and repair
In Records and sample tracking, copy tool output without definitions, then retain the conclusion when asked: The value looks plausible but QC fails. What next?
Even a result of 4 does not explain when Investigate under the protocol, flag affected results and document retesting is supported.
Mean response 2.2; (2.2−0.2)/0.5=4. QC fails, so this is not an accepted result. Then test assumptions in Reproducibility and versioning.